A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541896



Internal ID15512198
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:25562456..25599997hg38UCSC Ensembl
Innerchr9:25562454..25599995hg19UCSC Ensembl
Innerchr9:25552454..25589995hg18UCSC Ensembl
Innerchr9:25552454..25589995hg17UCSC Ensembl
Cytoband9p21.2
Allele length
AssemblyAllele length
hg3837542
hg1937542
hg1837542
hg1737542
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466319
Supporting Variants
SamplesNINDS_213
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541896
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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