A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541879



Internal ID15504873
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:21037772..21082815hg38UCSC Ensembl
Innerchr9:21037771..21082814hg19UCSC Ensembl
Innerchr9:21027771..21072814hg18UCSC Ensembl
Innerchr9:21027771..21072814hg17UCSC Ensembl
Cytoband9p21.3
Allele length
AssemblyAllele length
hg3845044
hg1945044
hg1845044
hg1745044
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466294
Supporting Variants
Samples1798860565_A
Known GenesIFNB1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541879
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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