A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541876



Internal ID15508342
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:20508505..20548239hg38UCSC Ensembl
Innerchr9:20508503..20548238hg19UCSC Ensembl
Innerchr9:20498503..20538238hg18UCSC Ensembl
Innerchr9:20498503..20538238hg17UCSC Ensembl
Cytoband9p21.3
Allele length
AssemblyAllele length
hg3839735
hg1939736
hg1839736
hg1739736
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466290
Supporting Variants
SamplesHGDP00806
Known GenesMLLT3
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541876
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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