A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541867



Internal ID15507073
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:17699983..17726583hg38UCSC Ensembl
Innerchr9:17699981..17726581hg19UCSC Ensembl
Innerchr9:17689981..17716581hg18UCSC Ensembl
Innerchr9:17689981..17716581hg17UCSC Ensembl
Cytoband9p22.2
Allele length
AssemblyAllele length
hg3826601
hg1926601
hg1826601
hg1726601
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466279
Supporting Variants
SamplesHGDP00602
Known GenesSH3GL2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541867
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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