A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541859



Internal ID15510814
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:16903448..16950862hg38UCSC Ensembl
Innerchr9:16903446..16950860hg19UCSC Ensembl
Innerchr9:16893446..16940860hg18UCSC Ensembl
Innerchr9:16893446..16940860hg17UCSC Ensembl
Cytoband9p22.2
Allele length
AssemblyAllele length
hg3847415
hg1947415
hg1847415
hg1747415
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466266
Supporting Variants
SamplesHGDP01304
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541859
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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