A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541857



Internal ID15506503
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:16359610..16390631hg38UCSC Ensembl
Innerchr9:16359608..16390629hg19UCSC Ensembl
Innerchr9:16349608..16380629hg18UCSC Ensembl
Innerchr9:16349608..16380629hg17UCSC Ensembl
Cytoband9p22.3
Allele length
AssemblyAllele length
hg3831022
hg1931022
hg1831022
hg1731022
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466264
Supporting Variants
SamplesHGDP00516
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541857
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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