A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541853



Internal ID15512089
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:14639668..14662461hg38UCSC Ensembl
Innerchr9:14639666..14662459hg19UCSC Ensembl
Innerchr9:14629666..14652459hg18UCSC Ensembl
Innerchr9:14629666..14652459hg17UCSC Ensembl
Cytoband9p22.3
Allele length
AssemblyAllele length
hg3822794
hg1922794
hg1822794
hg1722794
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466260
Supporting Variants
SamplesNINDS_199
Known GenesZDHHC21
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541853
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer