Variant Details

Variant: nssv541798

Internal ID

15502571

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr9:11305052..11561438	hg38	UCSC Ensembl
Inner	chr9:11305052..11561438	hg19	UCSC Ensembl
Inner	chr9:11295052..11551438	hg18	UCSC Ensembl
Inner	chr9:11295052..11551438	hg17	UCSC Ensembl

Cytoband

9p23

Allele length

Assembly	Allele length
hg38	256387
hg19	256387
hg18	256387
hg17	256387

Variant Type

CNV loss

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv466183

Supporting Variants

Samples

1780854455_A

Known Genes

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv541798

Frequency

Sample Size	1557
Observed Gain	0
Observed Loss	1
Observed Complex	0
Frequency	n/a