A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv541732



Internal ID15505420
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:4938232..4957650hg38UCSC Ensembl
Innerchr9:4938232..4957650hg19UCSC Ensembl
Innerchr9:4928232..4947650hg18UCSC Ensembl
Innerchr9:4928232..4947650hg17UCSC Ensembl
Cytoband9p24.1
Allele length
AssemblyAllele length
hg3819419
hg1919419
hg1819419
hg1719419
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv466099
Supporting Variants
SamplesHGDP00131
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv541732
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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