A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv540505



Internal ID15166323
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:82328229..82363944hg38UCSC Ensembl
Innerchr7:81957545..81993260hg19UCSC Ensembl
Innerchr7:81795481..81831196hg18UCSC Ensembl
Innerchr7:81602196..81637911hg17UCSC Ensembl
Cytoband7q21.11
Allele length
AssemblyAllele length
hg3835716
hg1935716
hg1835716
hg1735716
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv464612
Supporting Variants
SamplesNINDS_94
Known GenesCACNA2D1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv540505
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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