A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv540107



Internal ID15507731
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:164726760..164800526hg38UCSC Ensembl
Innerchr6:165147793..165214015hg19UCSC Ensembl
Innerchr6:165067783..165134005hg18UCSC Ensembl
Innerchr6:165118204..165184426hg17UCSC Ensembl
Cytoband6q27
Allele length
AssemblyAllele length
hg3873767
hg1966223
hg1866223
hg1766223
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv464134
Supporting Variants
SamplesHGDP00703
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv540107
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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