A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv539969



Internal ID15509142
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:92390188..92430198hg38UCSC Ensembl
Innerchr6:93099906..93139916hg19UCSC Ensembl
Innerchr6:93156627..93196637hg18UCSC Ensembl
Innerchr6:93156627..93196637hg17UCSC Ensembl
Cytoband6q15
Allele length
AssemblyAllele length
hg3840011
hg1940011
hg1840011
hg1740011
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv463959
Supporting Variants
SamplesHGDP00948
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv539969
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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