A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv539017



Internal ID15509746
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr6:64544310..64633573hg38UCSC Ensembl
Innerchr6:65254203..65343466hg19UCSC Ensembl
Innerchr6:65310924..65400187hg18UCSC Ensembl
Innerchr6:65310924..65400187hg17UCSC Ensembl
Cytoband6q12
Allele length
AssemblyAllele length
hg3889264
hg1989264
hg1889264
hg1789264
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv462971
Supporting Variants
SamplesHGDP01074
Known GenesEYS
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv539017
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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