A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv538455



Internal ID15505636
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr5:85118019..85174861hg38UCSC Ensembl
Innerchr5:84413837..84470679hg19UCSC Ensembl
Innerchr5:84449593..84506435hg18UCSC Ensembl
Innerchr5:84449593..84506435hg17UCSC Ensembl
Cytoband5q14.3
Allele length
AssemblyAllele length
hg3856843
hg1956843
hg1856843
hg1756843
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv462242
Supporting Variants
SamplesHGDP00171
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv538455
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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