A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv537725



Internal ID15511645
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:33363124..33404711hg38UCSC Ensembl
Innerchr4:33364746..33406333hg19UCSC Ensembl
Innerchr4:33041141..33082728hg18UCSC Ensembl
Innerchr4:33187312..33228899hg17UCSC Ensembl
Cytoband4p15.1
Allele length
AssemblyAllele length
hg3841588
hg1941588
hg1841588
hg1741588
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv461321
Supporting Variants
SamplesNINDS_125
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv537725
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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