A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv537400



Internal ID15504271
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:162376642..162412903hg38UCSC Ensembl
Innerchr3:162094430..162130691hg19UCSC Ensembl
Innerchr3:163577124..163613385hg18UCSC Ensembl
Innerchr3:163577132..163613393hg17UCSC Ensembl
Cytoband3q26.1
Allele length
AssemblyAllele length
hg3836262
hg1936262
hg1836262
hg1736262
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460924
Supporting Variants
Samples1782681080_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv537400
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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