A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv537310



Internal ID15157092
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:22125352..22186354hg38UCSC Ensembl
Innerchr1:22451845..22512847hg19UCSC Ensembl
Innerchr1:22324432..22385434hg18UCSC Ensembl
Innerchr1:22197151..22258153hg17UCSC Ensembl
Cytoband1p36.12
Allele length
AssemblyAllele length
hg3861003
hg1961003
hg1861003
hg1761003
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460806
Supporting Variants
Samples1780862415_A
Known GenesWNT4
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv537310
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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