A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv537002



Internal ID15159448
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:10464960..10471730hg38UCSC Ensembl
Innerchr3:10506644..10513414hg19UCSC Ensembl
Innerchr3:10481644..10488414hg18UCSC Ensembl
Innerchr3:10481644..10488414hg17UCSC Ensembl
Cytoband3p25.3
Allele length
AssemblyAllele length
hg386771
hg196771
hg186771
hg176771
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460423
Supporting Variants
SamplesHGDP00402
Known GenesATP2B2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv537002
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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