A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536942



Internal ID15160754
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:12820292..12854043hg38UCSC Ensembl
Innerchr1:12880153..12913896hg19UCSC Ensembl
Innerchr1:12802740..12836483hg18UCSC Ensembl
Innerchr1:12814419..12848162hg17UCSC Ensembl
Cytoband1p36.21
Allele length
AssemblyAllele length
hg3833752
hg1933744
hg1833744
hg1733744
Variant TypeCNV loss
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460350
Supporting Variants
SamplesHGDP00662
Known GenesHNRNPCL1, LOC649330, PRAMEF11
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536942
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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