A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536939



Internal ID15164164
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:4103854..4120923hg38UCSC Ensembl
Innerchr3:4145538..4162607hg19UCSC Ensembl
Innerchr3:4120538..4137607hg18UCSC Ensembl
Innerchr3:4120538..4137607hg17UCSC Ensembl
Cytoband3p26.1
Allele length
AssemblyAllele length
hg3817070
hg1917070
hg1817070
hg1717070
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460347
Supporting Variants
SamplesHGDP01309
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536939
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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