A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536935



Internal ID15504551
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:4046892..4059672hg38UCSC Ensembl
Innerchr3:4088576..4101356hg19UCSC Ensembl
Innerchr3:4063576..4076356hg18UCSC Ensembl
Innerchr3:4063576..4076356hg17UCSC Ensembl
Cytoband3p26.1
Allele length
AssemblyAllele length
hg3812781
hg1912781
hg1812781
hg1712781
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460343
Supporting Variants
Samples1782681313_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536935
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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