A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536902



Internal ID15162177
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:54290..132831hg38UCSC Ensembl
Innerchr3:95973..174514hg19UCSC Ensembl
Innerchr3:70973..149514hg18UCSC Ensembl
Innerchr3:70973..149514hg17UCSC Ensembl
Cytoband3p26.3
Allele length
AssemblyAllele length
hg3878542
hg1978542
hg1878542
hg1778542
Variant TypeCNV gain
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460301
Supporting Variants
SamplesHGDP00909
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536902
Frequency
Sample Size1557
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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