A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536901



Internal ID15505654
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr3:40338..143598hg38UCSC Ensembl
Innerchr3:82010..185281hg19UCSC Ensembl
Innerchr3:57010..160281hg18UCSC Ensembl
Innerchr3:57010..160281hg17UCSC Ensembl
Cytoband3p26.3
Allele length
AssemblyAllele length
hg38103261
hg19103272
hg18103272
hg17103272
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460300
Supporting Variants
SamplesHGDP00183
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536901
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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