A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536786



Internal ID15162741
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:12805784..12854043hg38UCSC Ensembl
Innerchr1:12865920..12913896hg19UCSC Ensembl
Innerchr1:12788507..12836483hg18UCSC Ensembl
Innerchr1:12800186..12848162hg17UCSC Ensembl
Cytoband1p36.21
Allele length
AssemblyAllele length
hg3848260
hg1947977
hg1847977
hg1747977
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv460184
Supporting Variants
SamplesHGDP01003
Known GenesHNRNPCL1, LOC649330, PRAMEF11
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536786
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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