Variant Details

Variant: nssv536685

Internal ID

15502522

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr2:209223356..209289486	hg38	UCSC Ensembl
Inner	chr2:210088080..210154210	hg19	UCSC Ensembl
Inner	chr2:209796325..209862455	hg18	UCSC Ensembl
Inner	chr2:209913586..209979716	hg17	UCSC Ensembl

Cytoband

2q34

Allele length

Assembly	Allele length
hg38	66131
hg19	66131
hg18	66131
hg17	66131

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv460060

Supporting Variants

Samples

1780854441_A

Known Genes

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv536685

Frequency

Sample Size	1557
Observed Gain	1
Observed Loss	0
Observed Complex	0
Frequency	n/a