A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536629



Internal ID15502787
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:187814246..187928511hg38UCSC Ensembl
Innerchr2:188678973..188793238hg19UCSC Ensembl
Innerchr2:188387218..188501483hg18UCSC Ensembl
Innerchr2:188504479..188618744hg17UCSC Ensembl
Cytoband2q32.1
Allele length
AssemblyAllele length
hg38114266
hg19114266
hg18114266
hg17114266
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv459991
Supporting Variants
Samples1780854536_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536629
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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