A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv536528



Internal ID15509169
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:25361301..25514700hg38UCSC Ensembl
Innerchr22:25757268..25910667hg19UCSC Ensembl
Innerchr22:24087268..24240667hg18UCSC Ensembl
Innerchr22:24081822..24235221hg17UCSC Ensembl
Cytoband22q11.23
Allele length
AssemblyAllele length
hg38153400
hg19153400
hg18153400
hg17153400
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv459858
Supporting Variants
SamplesHGDP00952
Known GenesCRYBB2P1, LRP5L, MIR6817
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv536528
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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