Variant DetailsVariant: nssv535905Internal ID | 15166248 | Landmark | | Location Information | | Cytoband | 20q13.33 | Allele length | Assembly | Allele length | hg38 | 479806 | hg19 | 536102 | hg18 | 573152 | hg17 | 573152 |
| Variant Type | CNV gain | Copy Number | 3 | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | S | Merged Variants | nsv459065 | Supporting Variants | | Samples | NINDS_83 | Known Genes | C20orf166, C20orf166-AS1, CABLES2, GATA5, LAMA5, LINC00659, LOC100127888, MIR1-1, MIR133A2, MIR4758, MRGBP, NTSR1, OGFR, OGFR-AS1, RBBP8NL, RPS21, SLCO4A1 | Method | SNP array | Analysis | An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives. | Platform | Not reported | Comments | | Reference | Itsara_et_al_2009 | Pubmed ID | 19166990 | Accession Number(s) | nssv535905
| Frequency | Sample Size | 1557 | Observed Gain | 1 | Observed Loss | 0 | Observed Complex | 0 | Frequency | n/a |
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