A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv535897



Internal ID15504982
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr20:61715436..61740822hg38UCSC Ensembl
Innerchr20:60290492..60315878hg19UCSC Ensembl
Innerchr20:59723887..59749273hg18UCSC Ensembl
Innerchr20:59723887..59749273hg17UCSC Ensembl
Cytoband20q13.33
Allele length
AssemblyAllele length
hg3825387
hg1925387
hg1825387
hg1725387
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv459056
Supporting Variants
SamplesHGDP00017
Known GenesCDH4
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv535897
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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