Variant Details

Variant: nssv535441

Internal ID

15157889

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr19:20673648..20804744	hg38	UCSC Ensembl
Inner	chr19:20856454..20987550	hg19	UCSC Ensembl
Inner	chr19:20648294..20779390	hg18	UCSC Ensembl
Inner	chr19:20648294..20779390	hg17	UCSC Ensembl

Cytoband

19p12

Allele length

Assembly	Allele length
hg38	131097
hg19	131097
hg18	131097
hg17	131097

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv458524

Supporting Variants

Samples

1782681317_A

Known Genes

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv535441

Frequency

Sample Size	1557
Observed Gain	1
Observed Loss	0
Observed Complex	0
Frequency	n/a