Variant Details

Variant: nssv535436

Internal ID

15157478

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr19:20643886..20858544	hg38	UCSC Ensembl
Inner	chr19:20826692..21041350	hg19	UCSC Ensembl
Inner	chr19:20618532..20833190	hg18	UCSC Ensembl
Inner	chr19:20618532..20833190	hg17	UCSC Ensembl

Cytoband

19p12

Allele length

Assembly	Allele length
hg38	214659
hg19	214659
hg18	214659
hg17	214659

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv458512

Supporting Variants

Samples

1780862577_A

Known Genes

ZNF626

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv535436

Frequency

Sample Size	1557
Observed Gain	1
Observed Loss	0
Observed Complex	0
Frequency	n/a