Variant Details

Variant: nssv535318

Internal ID

15161466

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr19:19752205..19838400	hg38	UCSC Ensembl
Inner	chr19:19863014..19949209	hg19	UCSC Ensembl
Inner	chr19:19724014..19810209	hg18	UCSC Ensembl
Inner	chr19:19724014..19810209	hg17	UCSC Ensembl

Cytoband

19p12

Allele length

Assembly	Allele length
hg38	86196
hg19	86196
hg18	86196
hg17	86196

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv458375

Supporting Variants

Samples

HGDP00776

Known Genes

LINC00663, ZNF506

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv535318

Frequency

Sample Size	1557
Observed Gain	1
Observed Loss	0
Observed Complex	0
Frequency	n/a