A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534868



Internal ID15162834
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr17:43039112..43146838hg38UCSC Ensembl
Innerchr17:41191129..41298855hg19UCSC Ensembl
Innerchr17:38444655..38552381hg18UCSC Ensembl
Innerchr17:38444655..38552381hg17UCSC Ensembl
Cytoband17q21.31
Allele length
AssemblyAllele length
hg38107727
hg19107727
hg18107727
hg17107727
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457743
Supporting Variants
SamplesHGDP01028
Known GenesBRCA1, NBR2
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534868
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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