Variant Details

Variant: nssv534857

Internal ID

15510104

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr17:35357016..35441180	hg38	UCSC Ensembl
Inner	chr17:33684035..33768199	hg19	UCSC Ensembl
Inner	chr17:30708148..30792312	hg18	UCSC Ensembl
Inner	chr17:30708148..30792312	hg17	UCSC Ensembl

Cytoband

17q12

Allele length

Assembly	Allele length
hg38	84165
hg19	84165
hg18	84165
hg17	84165

Variant Type

CNV gain

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

nsv457728

Supporting Variants

Samples

HGDP01189

Known Genes

SLFN11, SLFN12, SLFN13

Method

SNP array

Analysis

An HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.

Platform

Not reported

Comments

Reference

Itsara_et_al_2009

Pubmed ID

19166990

Accession Number(s)

nssv534857

Frequency

Sample Size	1557
Observed Gain	1
Observed Loss	0
Observed Complex	0
Frequency	n/a