A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534492



Internal ID15510837
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:95167521..95228595hg38UCSC Ensembl
Innerchr15:95710750..95771824hg19UCSC Ensembl
Innerchr15:93511754..93572828hg18UCSC Ensembl
Innerchr15:93511754..93572828hg17UCSC Ensembl
Cytoband15q26.2
Allele length
AssemblyAllele length
hg3861075
hg1961075
hg1861075
hg1761075
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457265
Supporting Variants
SamplesHGDP01307
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534492
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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