A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534488



Internal ID15507866
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:93812994..93941235hg38UCSC Ensembl
Innerchr15:94356223..94484464hg19UCSC Ensembl
Innerchr15:92157227..92285468hg18UCSC Ensembl
Innerchr15:92157227..92285468hg17UCSC Ensembl
Cytoband15q26.2
Allele length
AssemblyAllele length
hg38128242
hg19128242
hg18128242
hg17128242
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457261
Supporting Variants
SamplesHGDP00731
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534488
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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