A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534485



Internal ID15510297
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:93407473..93423849hg38UCSC Ensembl
Innerchr15:93950702..93967078hg19UCSC Ensembl
Innerchr15:91751706..91768082hg18UCSC Ensembl
Innerchr15:91751706..91768082hg17UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg3816377
hg1916377
hg1816377
hg1716377
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457256
Supporting Variants
SamplesHGDP01223
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534485
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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