A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534480



Internal ID15509189
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:93191753..93221511hg38UCSC Ensembl
Innerchr15:93734982..93764740hg19UCSC Ensembl
Innerchr15:91535986..91565744hg18UCSC Ensembl
Innerchr15:91535986..91565744hg17UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg3829759
hg1929759
hg1829759
hg1729759
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457251
Supporting Variants
SamplesHGDP00955
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534480
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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