A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534477



Internal ID15162030
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:89464359..89517327hg38UCSC Ensembl
Innerchr15:90007590..90060558hg19UCSC Ensembl
Innerchr15:87808594..87861562hg18UCSC Ensembl
Innerchr15:87808594..87861562hg17UCSC Ensembl
Cytoband15q26.1
Allele length
AssemblyAllele length
hg3852969
hg1952969
hg1852969
hg1752969
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457245
Supporting Variants
SamplesHGDP00888
Known GenesLINC00928, RHCG
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534477
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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