A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534466



Internal ID15512485
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:87256693..87319578hg38UCSC Ensembl
Innerchr15:87799924..87862809hg19UCSC Ensembl
Innerchr15:85600928..85663813hg18UCSC Ensembl
Innerchr15:85600928..85663813hg17UCSC Ensembl
Cytoband15q25.3
Allele length
AssemblyAllele length
hg3862886
hg1962886
hg1862886
hg1762886
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457233
Supporting Variants
SamplesNINDS_260
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534466
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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