A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534465



Internal ID15512019
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:87245241..87319578hg38UCSC Ensembl
Innerchr15:87788472..87862809hg19UCSC Ensembl
Innerchr15:85589476..85663813hg18UCSC Ensembl
Innerchr15:85589476..85663813hg17UCSC Ensembl
Cytoband15q25.3
Allele length
AssemblyAllele length
hg3874338
hg1974338
hg1874338
hg1774338
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457232
Supporting Variants
SamplesNINDS_186
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534465
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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