A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534395



Internal ID15162657
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:50726920..50825327hg38UCSC Ensembl
Innerchr15:51019117..51117524hg19UCSC Ensembl
Innerchr15:48806409..48904816hg18UCSC Ensembl
Innerchr15:48806409..48904816hg17UCSC Ensembl
Cytoband15q21.2
Allele length
AssemblyAllele length
hg3898408
hg1998408
hg1898408
hg1798408
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457137
Supporting Variants
SamplesHGDP00977
Known GenesSPPL2A
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534395
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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