A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534383



Internal ID15502164
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:44782321..44806944hg38UCSC Ensembl
Innerchr15:45074519..45099142hg19UCSC Ensembl
Innerchr15:42861811..42886434hg18UCSC Ensembl
Innerchr15:42861811..42886434hg17UCSC Ensembl
Cytoband15q21.1
Allele length
AssemblyAllele length
hg3824624
hg1924624
hg1824624
hg1724624
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457123
Supporting Variants
Samples1780854205_A
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534383
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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