A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534381



Internal ID15512522
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:42104084..42125887hg38UCSC Ensembl
Innerchr15:42396282..42418085hg19UCSC Ensembl
Innerchr15:40183574..40205377hg18UCSC Ensembl
Innerchr15:40183574..40205377hg17UCSC Ensembl
Cytoband15q15.1
Allele length
AssemblyAllele length
hg3821804
hg1921804
hg1821804
hg1721804
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457121
Supporting Variants
SamplesNINDS_272
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534381
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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