A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534377



Internal ID15506648
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:38754598..38789516hg38UCSC Ensembl
Innerchr15:39046799..39081717hg19UCSC Ensembl
Innerchr15:36834091..36869009hg18UCSC Ensembl
Innerchr15:36834091..36869009hg17UCSC Ensembl
Cytoband15q14
Allele length
AssemblyAllele length
hg3834919
hg1934919
hg1834919
hg1734919
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv457115
Supporting Variants
SamplesHGDP00540
Known Genes
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534377
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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