A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534094



Internal ID15502300
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:34426393..34506266hg38UCSC Ensembl
Innerchr15:34718594..34798467hg19UCSC Ensembl
Innerchr15:32505886..32585759hg18UCSC Ensembl
Innerchr15:32505886..32585759hg17UCSC Ensembl
Cytoband15q14
Allele length
AssemblyAllele length
hg3879874
hg1979874
hg1879874
hg1779874
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv456815
Supporting Variants
Samples1780854294_A
Known GenesGOLGA8A
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534094
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer