A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv534036



Internal ID15155812
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr15:31064935..31092594hg38UCSC Ensembl
Innerchr15:31357138..31384797hg19UCSC Ensembl
Innerchr15:29144430..29172089hg18UCSC Ensembl
Innerchr15:29144430..29172089hg17UCSC Ensembl
Cytoband15q13.3
Allele length
AssemblyAllele length
hg3827660
hg1927660
hg1827660
hg1727660
Variant TypeCNV loss
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv456746
Supporting Variants
Samples1780854419_A
Known GenesMIR211, TRPM1
MethodSNP array
AnalysisAn HMM examining LogR Ratio and B-allele Frequency was used to classify SNP array data into regions of copy-number 0-3. A combination of manual and automated curation was used on the resulting output to reduce false positives.
PlatformNot reported
Comments
ReferenceItsara_et_al_2009
Pubmed ID19166990
Accession Number(s)nssv534036
Frequency
Sample Size1557
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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