A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4040904



Internal ID19299726
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr22:45765349..45887011hg38UCSC Ensembl
Outerchr22:45760532..45893256hg38UCSC Ensembl
Innerchr22:46161229..46282891hg19UCSC Ensembl
Outerchr22:46156412..46289136hg19UCSC Ensembl
Cytoband22q13.31
Allele length
AssemblyAllele length
hg38132725
hg19132725
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160779
Supporting Variants
Samples
Known GenesATXN10, MIR4762
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4040904
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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