A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4039852



Internal ID19301991
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:42978346..43099219hg38UCSC Ensembl
Outerchr19:42975800..43103053hg38UCSC Ensembl
Innerchr19:43482498..43603371hg19UCSC Ensembl
Outerchr19:43479952..43607205hg19UCSC Ensembl
Cytoband19q13.31
Allele length
AssemblyAllele length
hg38127254
hg19127254
Variant TypeCNV duplication
Copy Number3
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160637
Supporting Variants
Samples
Known GenesPSG11, PSG2
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4039852
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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