A curated catalogue of human genomic structural variation




Variant Details

Variant: nssv4039847



Internal ID19301986
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:42790238..43198880hg38UCSC Ensembl
Outerchr19:42786621..43199352hg38UCSC Ensembl
Innerchr19:43294390..43703032hg19UCSC Ensembl
Outerchr19:43290773..43703504hg19UCSC Ensembl
Cytoband19q13.2
Allele length
AssemblyAllele length
hg38412732
hg19412732
Variant TypeCNV deletion
Copy Number1
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusS
Merged Variantsnsv1160632
Supporting Variants
Samples
Known GenesLOC100289650, PSG1, PSG10P, PSG11, PSG2, PSG4, PSG5, PSG6, PSG7
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nssv4039847
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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